Reference

Data: Fisheries (CalCOFI) Generate figures for CalCOFI dataset.
calcofi_map()	Map of CALCOFI sites
calcofi_plot()	Produces plots of CALCOFI data
Data: Oceanography (ERDDAP) Extract, calculate and plot oceanographic data.
calculate_SST_anomaly()	Calculate SST anomaly
calculate_statistics()	Generate statistics for any missing months for NMS Sanctuary
get_dates()	Get date range for an ERDDAP data set
ply2erddap()	Extract ERDDAP statistics from polygon by year-month
plot_metric_timeseries()	Plot ERRDAP time series data
plot_SST_anomaly()	Plot SST anomaly data
Data: Rocky intertidal (MARINe) Produce interactive maps and plots.
rocky_clusters	Rocky intertidal site clusters
rocky_counts	Rocky intertidal species counts
rocky_cover	Rocky intertidal percent cover data
rocky_map()	Map rocky intertidal sites where data was collected
rocky_sites	Rocky intertidal sites
rocky_species	Rocky species
rocky_tsplot()	Plot time series of rocky intertidal monitoring data
Reporting functions Render html for R markdown files that form the modal windows.
Sanctuaries utilities Utility functions for Sanctuary regions.
get_nms_polygons()	Get National Marine Sanctuary polygons
Other Other functions not defined by concepts above
calcofi_map()	Map of CALCOFI sites
calcofi_plot()	Produces plots of CALCOFI data
calculate_SST_anomaly()	Calculate SST anomaly
calculate_statistics()	Generate statistics for any missing months for NMS Sanctuary
get_dates()	Get date range for an ERDDAP data set
get_nms_polygons()	Get National Marine Sanctuary polygons
make_rocky_sites()	Make Sanctuary sites for mapping from raw rocky intertidal (MARINe) data file
plot_SST_anomaly()	Plot SST anomaly data
plot_metric_timeseries()	Plot ERRDAP time series data
ply2erddap()	Extract ERDDAP statistics from polygon by year-month
read_csv_fmt()	read_csv_fmt BEN
rocky_clusters	Rocky intertidal site clusters
rocky_counts	Rocky intertidal species counts
rocky_cover	Rocky intertidal percent cover data
rocky_map()	Map rocky intertidal sites where data was collected
rocky_sites	Rocky intertidal sites
rocky_species	Rocky species
rocky_tsplot()	Plot time series of rocky intertidal monitoring data
sanctuaries	Sanctuaries with spatial information