Package index • onmsR

Data: Fisheries (CalCOFI)

Generate figures for CalCOFI dataset.

calcofi_map(): Map of CALCOFI sites

calcofi_plot(): Produces plots of CALCOFI data

Data: Oceanography (ERDDAP)

Extract, calculate and plot oceanographic data.

calculate_SST_anomaly(): Calculate SST anomaly

calculate_statistics(): Generate statistics for any missing months for NMS Sanctuary

get_dates(): Get date range for an ERDDAP data set

ply2erddap(): Extract ERDDAP statistics from polygon by year-month

plot_metric_timeseries(): Plot ERRDAP time series data

plot_SST_anomaly(): Plot SST anomaly data

Data: Rocky intertidal (MARINe)

Produce interactive maps and plots.

rocky_clusters: Rocky intertidal site clusters

rocky_counts: Rocky intertidal species counts

rocky_cover: Rocky intertidal percent cover data

rocky_map(): Map rocky intertidal sites where data was collected

rocky_sites: Rocky intertidal sites

rocky_species: Rocky species

rocky_tsplot(): Plot time series of rocky intertidal monitoring data

Sanctuaries utilities

Utility functions for Sanctuary regions.

get_nms_polygons(): Get National Marine Sanctuary polygons

Other

Other functions not defined by concepts above

calcofi_map(): Map of CALCOFI sites

calcofi_plot(): Produces plots of CALCOFI data

calculate_SST_anomaly(): Calculate SST anomaly

calculate_statistics(): Generate statistics for any missing months for NMS Sanctuary

get_dates(): Get date range for an ERDDAP data set

get_nms_polygons(): Get National Marine Sanctuary polygons

make_rocky_sites(): Make Sanctuary sites for mapping from raw rocky intertidal (MARINe) data file

plot_SST_anomaly(): Plot SST anomaly data

plot_metric_timeseries(): Plot ERRDAP time series data

ply2erddap(): Extract ERDDAP statistics from polygon by year-month

read_csv_fmt(): read_csv_fmt BEN

rocky_clusters: Rocky intertidal site clusters

rocky_counts: Rocky intertidal species counts

rocky_cover: Rocky intertidal percent cover data

rocky_map(): Map rocky intertidal sites where data was collected

rocky_sites: Rocky intertidal sites

rocky_species: Rocky species

rocky_tsplot(): Plot time series of rocky intertidal monitoring data

sanctuaries: Sanctuaries with spatial information